Predicting the risk of primary Sjögren's syndrome with key N7-methylguanosine-related genes: A novel XGBoost model

Hui Xie, Yin mei Deng, Jiao yan Li, Kai hong Xie, Tan Tao, Jian fang Zhang

Research output: Contribution to journalArticlepeer-review

Abstract

Objectives: N7-methylguanosine (m7G) plays a crucial role in mRNA metabolism and other biological processes. However, its regulators' function in Primary Sjögren's Syndrome (PSS) remains enigmatic. Methods: We screened five key m7G-related genes across multiple datasets, leveraging statistical and machine learning computations. Based on these genes, we developed a prediction model employing the extreme gradient boosting decision tree (XGBoost) method to assess PSS risk. Immune infiltration in PSS samples was analyzed using the ssGSEA method, revealing the immune landscape of PSS patients. Results: The XGBoost model exhibited high accuracy, AUC, sensitivity, and specificity in both training, test sets and extra-test set. The decision curve confirmed its clinical utility. Our findings suggest that m7G methylation might contribute to PSS pathogenesis through immune modulation. Conclusions: m7G regulators play an important role in the development of PSS. Our study of m7G-realted genes may inform future immunotherapy strategies for PSS.

Original languageEnglish
Article numbere31307
JournalHeliyon
Volume10
Issue number10
DOIs
Publication statusPublished - 30 May 2024

Keywords

  • Gene expression omnibus database
  • Machine learning
  • N7-methylguanosine
  • Primary Sjögren's syndrome

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