TY - JOUR
T1 - From theory to experiment
T2 - transformer-based generation enables rapid discovery of novel reactions
AU - Wang, Xinqiao
AU - Yao, Chuansheng
AU - Zhang, Yun
AU - Yu, Jiahui
AU - Qiao, Haoran
AU - Zhang, Chengyun
AU - Wu, Yejian
AU - Bai, Renren
AU - Duan, Hongliang
N1 - Publisher Copyright:
© 2022, The Author(s).
PY - 2022/12
Y1 - 2022/12
N2 - Deep learning methods, such as reaction prediction and retrosynthesis analysis, have demonstrated their significance in the chemical field. However, the de novo generation of novel reactions using artificial intelligence technology requires further exploration. Inspired by molecular generation, we proposed a novel task of reaction generation. Herein, Heck reactions were applied to train the transformer model, a state-of-art natural language process model, to generate 4717 reactions after sampling and processing. Then, 2253 novel Heck reactions were confirmed by organizing chemists to judge the generated reactions. More importantly, further organic synthesis experiments were performed to verify the accuracy and feasibility of representative reactions. The total process, from Heck reaction generation to experimental verification, required only 15 days, demonstrating that our model has well-learned reaction rules in-depth and can contribute to novel reaction discovery and chemical space exploration.
AB - Deep learning methods, such as reaction prediction and retrosynthesis analysis, have demonstrated their significance in the chemical field. However, the de novo generation of novel reactions using artificial intelligence technology requires further exploration. Inspired by molecular generation, we proposed a novel task of reaction generation. Herein, Heck reactions were applied to train the transformer model, a state-of-art natural language process model, to generate 4717 reactions after sampling and processing. Then, 2253 novel Heck reactions were confirmed by organizing chemists to judge the generated reactions. More importantly, further organic synthesis experiments were performed to verify the accuracy and feasibility of representative reactions. The total process, from Heck reaction generation to experimental verification, required only 15 days, demonstrating that our model has well-learned reaction rules in-depth and can contribute to novel reaction discovery and chemical space exploration.
KW - Deep learning
KW - Heck reactions
KW - Reaction generation
UR - http://www.scopus.com/inward/record.url?scp=85137573033&partnerID=8YFLogxK
U2 - 10.1186/s13321-022-00638-z
DO - 10.1186/s13321-022-00638-z
M3 - Article
AN - SCOPUS:85137573033
SN - 1758-2946
VL - 14
JO - Journal of Cheminformatics
JF - Journal of Cheminformatics
IS - 1
M1 - 60
ER -